深度神经网络 (DNN) 模型用于 HIV 预测 - Python 实现
导入必要的库
import torch import torch.nn as nn import pandas as pd import matplotlib.pyplot as plt from sklearn.model_selection import train_test_split from sklearn.metrics import roc_curve, auc
读取数据
data = pd.read_excel('C:\Users\lenovo\Desktop\HIV\DNN神经网络测试\output_data1.xlsx') x = data.iloc[:, 1:].values y = data.iloc[:, 0].values
数据归一化
x = (x - x.mean()) / x.std()
划分训练集和测试集
x_train, x_test, y_train, y_test = train_test_split(x, y, test_size=0.2, random_state=42)
将 numpy 数组转换为张量
x_train = torch.Tensor(x_train) y_train = torch.Tensor(y_train) x_test = torch.Tensor(x_test) y_test = torch.Tensor(y_test)
定义模型
class DNN(nn.Module): def init(self, input_size, num_classes): super(DNN, self).init() self.fc1 = nn.Linear(input_size, 8) self.fc2 = nn.Linear(8, 4) self.fc3 = nn.Linear(4, 8) self.out = nn.Linear(8, num_classes) self.dropout = nn.Dropout(p=0.5) self.attention = nn.Sequential( nn.Linear(hidden_size, 1), nn.Tanh(), nn.Softmax(dim=1) )
def forward(self, x):
out = torch.relu(self.fc1(x))
#out = self.dropout(out)
out = torch.relu(self.fc2(out))
#out = self.dropout(out)
out = torch.relu(self.fc3(out))
#out = self.dropout(out)
# attention_weights = self.attention(out)
# out = attention_weights * out
out = self.out(out)
return out
定义超参数
input_size = 16 hidden_size = 8 num_classes = 2 learning_rate = 0.001 num_epochs = 100
初始化模型
model = DNN(input_size, num_classes)
定义损失函数和优化器
criterion = nn.CrossEntropyLoss() optimizer = torch.optim.Adam(model.parameters(), lr=learning_rate)
训练模型
train_loss = [] train_accuracy = [] for epoch in range(num_epochs): # 前向传播和反向传播 outputs = model(x_train) loss = criterion(outputs, y_train.long()) optimizer.zero_grad() loss.backward() optimizer.step()
# 计算准确率
_, predicted = torch.max(outputs.data, 1)
total = y_train.size(0)
correct = (predicted == y_train.long()).sum().item()
accuracy = correct / total
train_accuracy.append(accuracy)
train_loss.append(loss.item())
# 输出训练信息
print('Epoch [{}/{}], Loss: {:.4f}, Accuracy: {:.2f}%'
.format(epoch + 1, num_epochs, loss.item(), accuracy * 100))
在测试集上进行预测
with torch.no_grad(): outputs = model(x_test) loss = criterion(outputs, y_test.long()) _, predicted = torch.max(outputs.data, 1) total = y_test.size(0) correct = (predicted == y_test.long()).sum().item() accuracy = correct / total print('Test Accuracy: {:.2f}%'.format(accuracy * 100))
# 计算 AUC
prob = torch.softmax(outputs, dim=1)[:, 1]
fpr, tpr, _ = roc_curve(y_test, prob)
roc_auc = auc(fpr, tpr)
print('AUC: {:.2f}'.format(roc_auc))
输出每个样本的概率
prob = torch.softmax(outputs, dim=1)[:, 1] print('每个样本的概率:', prob.detach().numpy().reshape(-1, 1))
读取验证集数据
val_data = pd.read_excel('C:\Users\lenovo\Desktop\HIV\DNN神经网络测试\验证.xlsx') val_x = val_data.iloc[:, 1:].values val_y = val_data.iloc[:, 0].values
将 numpy 数组转换为张量
x = torch.Tensor(x) y = torch.Tensor(y) val_x = torch.Tensor(val_x) val_y = torch.Tensor(val_y)
数据归一化
x_mean = x.mean() x_std = x.std() x = (x - x_mean) / x_std val_x = (val_x - x_mean) / x_std
定义模型、超参数、损失函数和优化器...
训练模型...
输出每个样本的概率...
绘制准确率变化的图...
绘制损失变化的图...
绘制 ROC 图...
验证模型
model.eval() val_outputs = model(val_x) val_loss = criterion(val_outputs, val_y.long())
计算准确率
_, val_predicted = torch.max(val_outputs.data, 1) val_total = val_y.size(0) val_correct = (val_predicted == val_y.long()).sum().item() val_accuracy = val_correct / val_total print('Validation Loss: {:.4f}, Accuracy: {:.2f}%'.format(val_loss.item(), val_accuracy * 100))
输出验证集每个样本的概率
val_prob = torch.softmax(val_outputs, dim=1)[:, 1] print('Validation 每个样本的概率:', val_prob.detach().numpy().reshape(-1, 1))
在总共 130 个样本的基础上:为什么上述代码的验证集的准确率很低 内容:可能是由于模型过拟合了训练集,导致在验证集上表现不佳。可以考虑加入正则化方法、调整模型结构或者增加数据量等方式来解决过拟合问题。另外,也可以尝试使用交叉验证等方法来更准确地评估模型的性能。
原文地址: https://www.cveoy.top/t/topic/neoA 著作权归作者所有。请勿转载和采集!