Genome Taxonomy Database Toolkit (GTDB-Tk) for Taxonomic Classification and Phylogenomic Analysis
The Genome Taxonomy Database Toolkit (GTDB-Tk) software was used to identify and align genomes in this study. Specifically, the GTDB-Tk 'identify' module was used to assign taxonomic classifications to the genomes, while the GTDB-Tk 'align' module was used to align and generate phylogenomic trees based on these classifications.
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