Rosetta Crash Log: FastRelax Error in 2022.11+release.512e589
[START_CRASH_REPORT] [ROSETTA_VERSION]: 2022.11+release.512e589 [COMMIT_DATE]: 2022-03-14T17:54:23.772418 [APPLICATION]: /mnt/hpc/software/apps/rosetta.source.release-314/main/source/bin/rosetta_scripts.mpi.linuxgccrelease [MODE]: Release [EXTRAS]: mpi (OpenMPI 3.1.4) [OS]: GNU/Linux [COMPILER]: GCC version '7.3.1 20180303 (Red Hat 7.3.1-5)' [STDLIB]: libstdc++ version 20180303 [START_OPTIONS] -in:file:s=1wcg_A.pdb -out:nstruct=1 -out:path:pdb=/mnt/hpc/home/zhengpu/srb/enzdes/ -parser:protocol=FastRelax.xml
[END_OPTIONS]
/mnt/hpc/software/apps/rosetta.source.release-314/main/source/build/src/release/linux/3.10/64/x86/gcc/7/mpi/libutility.so(backtrace_string(int)+0x39) [0x2ac0d7bbadd9] /mnt/hpc/software/apps/rosetta.source.release-314/main/source/build/src/release/linux/3.10/64/x86/gcc/7/mpi/libutility.so(utility::excn::Exception::Exception(char const*, int, std::string const&)+0x51) [0x2ac0d7b1c181] /mnt/hpc/software/apps/rosetta.source.release-314/main/source/build/src/release/linux/3.10/64/x86/gcc/7/mpi/libutility.so(utility::UtilityExitException::UtilityExitException(char const*, int, std::string const&)+0x9a) [0x2ac0d7bbff1a] /mnt/hpc/software/apps/rosetta.source.release-314/main/source/build/src/release/linux/3.10/64/x86/gcc/7/mpi/libutility.so(utility::exit(char const*, int, std::string const&, int)+0x36) [0x2ac0d7bbfb26] /mnt/hpc/software/apps/rosetta.source.release-314/main/source/build/src/release/linux/3.10/64/x86/gcc/7/mpi/libprotocols.4.so(protocols::relax::FastRelax::apply(core::pose::Pose&)+0x1e18) [0x2ac0ce77bd48] /mnt/hpc/software/apps/rosetta.source.release-314/main/source/build/src/release/linux/3.10/64/x86/gcc/7/mpi/libprotocols.1.so(protocols::rosetta_scripts::ParsedProtocol::apply_mover(core::pose::Pose&, protocols::rosetta_scripts::ParsedProtocol::ParsedProtocolStep const&)+0x22f) [0x2ac0d15ea96f] /mnt/hpc/software/apps/rosetta.source.release-314/main/source/build/src/release/linux/3.10/64/x86/gcc/7/mpi/libprotocols.1.so(protocols::rosetta_scripts::ParsedProtocol::apply_step(core::pose::Pose&, protocols::rosetta_scripts::ParsedProtocol::ParsedProtocolStep const&, bool)+0x1a) [0x2ac0d15eae2a] /mnt/hpc/software/apps/rosetta.source.release-314/main/source/build/src/release/linux/3.10/64/x86/gcc/7/mpi/libprotocols.1.so(protocols::rosetta_scripts::ParsedProtocol::sequence_protocol(core::pose::Pose&, __gnu_cxx::__normal_iterator<protocols::rosetta_scripts::ParsedProtocol::ParsedProtocolStep const*, std::vector<protocols::rosetta_scripts::ParsedProtocol::ParsedProtocolStep, std::allocatorprotocols::rosetta_scripts::ParsedProtocol::ParsedProtocolStep > >)+0x3d) [0x2ac0d15eb53d] /mnt/hpc/software/apps/rosetta.source.release-314/main/source/build/src/release/linux/3.10/64/x86/gcc/7/mpi/libprotocols.1.so(protocols::rosetta_scripts::ParsedProtocol::apply(core::pose::Pose&)+0x2be) [0x2ac0d15ec83e] /mnt/hpc/software/apps/rosetta.source.release-314/main/source/build/src/release/linux/3.10/64/x86/gcc/7/mpi/libprotocols.1.so(protocols::jd2::JobDistributor::run_one_job(std::shared_ptrprotocols::moves::Mover&, long, std::string&, std::string&, unsigned long&, unsigned long&, bool)+0xc81) [0x2ac0d1797bb1] /mnt/hpc/software/apps/rosetta.source.release-314/main/source/build/src/release/linux/3.10/64/x86/gcc/7/mpi/libprotocols.1.so(protocols::jd2::JobDistributor::go_main(std::shared_ptrprotocols::moves::Mover)+0x118) [0x2ac0d1799858] /mnt/hpc/software/apps/rosetta.source.release-314/main/source/build/src/release/linux/3.10/64/x86/gcc/7/mpi/libprotocols.1.so(protocols::jd2::FileSystemJobDistributor::go(std::shared_ptrprotocols::moves::Mover)+0x46) [0x2ac0d177faf6] /mnt/hpc/software/apps/rosetta.source.release-314/main/source/bin/rosetta_scripts.mpi.linuxgccrelease() [0x403e5f] /lib64/libc.so.6(__libc_start_main+0xf5) [0x2ac0db3d83d5] /mnt/hpc/software/apps/rosetta.source.release-314/main/source/bin/rosetta_scripts.mpi.linuxgccrelease() [0x4041d5]
[END_BACKTRACE]
[START_MESSAGE] [ ERROR ] UtilityExitException ERROR: Unknown command: #1
[END_MESSAGE] [END_CRASH_REPORT]
How to solve this issue: According to the crash log, the error happened in src/protocols/relax/FastRelax.cc, line 1059, which could be caused by incorrect input commands or parameters. Please review the input commands and parameters carefully, and make sure the file paths are correct. If the problem persists, consider submitting a bug report on the Rosetta official website for further assistance.
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