以下是一个使用Boost库的asio从NCBI的bioproject中下载所有accession号并将其输出为txt文件的C++代码示例:

#include <iostream>
#include <fstream>
#include <string>
#include <boost/asio.hpp>

using boost::asio::ip::tcp;

// 下载accession号并保存到文件
void downloadAccessionNumbers(const std::string& geneName, const std::string& outputFile)
{
    try {
        // 创建IO上下文
        boost::asio::io_context io_context;

        // 解析NCBI服务器的IP地址和端口号
        tcp::resolver resolver(io_context);
        tcp::resolver::results_type endpoints = resolver.resolve("www.ncbi.nlm.nih.gov", "http");

        // 创建socket并连接到NCBI服务器
        tcp::socket socket(io_context);
        boost::asio::connect(socket, endpoints);

        // 发送HTTP GET请求
        std::string request = "/bioproject/?term=" + geneName + "&report=docsum&format=text";
        boost::asio::write(socket, boost::asio::buffer("GET " + request + " HTTP/1.1\r\n"
                                                       "Host: www.ncbi.nlm.nih.gov\r\n"
                                                       "Connection: close\r\n\r\n"));

        // 读取服务器响应
        std::ofstream outputFileStream(outputFile);
        std::string response;
        while (boost::asio::read(socket, boost::asio::buffer(response), boost::asio::transfer_at_least(1)))
        {
            // 在响应中搜索accession号,并将其写入文件
            size_t found = response.find("ACCESSION ");
            while (found != std::string::npos)
            {
                size_t end = response.find("\n", found);
                std::string accession = response.substr(found + 10, end - found - 10);
                outputFileStream << accession << std::endl;
                found = response.find("ACCESSION ", found + 1);
            }
        }

        // 关闭文件和socket
        outputFileStream.close();
        socket.close();
    }
    catch (std::exception& e) {
        std::cerr << "Exception: " << e.what() << std::endl;
    }
}

int main()
{
    std::string geneName = "your_gene_name";
    std::string outputFile = "accession_numbers.txt";

    downloadAccessionNumbers(geneName, outputFile);

    return 0;
}

请将your_gene_name替换为你要搜索的基因名字,并将accession_numbers.txt替换为你想要保存accession号的文件名。运行代码后,将会在当前目录下生成一个包含所有accession号的accession_numbers.txt文件。

根据输入的基因名字用C++的Boost库的asio从NCBI的bioproject中下载所有accesstion号输出为txt文件

原文地址: https://www.cveoy.top/t/topic/inf4 著作权归作者所有。请勿转载和采集!

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